Our paper:
M Jain, J Shrager, E Harris, R Holbrook, A Grossman, and O Vallon
(2007)
EST assembly supported by a draft genome sequence: an analysis of
the
Chlamydomonas reinhardtii transcriptome.
has just appeared in the journal Nucleic Acids Research (NAR).
The paper is freely available here:
http://nar.oxfordjournals.org/cgi/content/full/gkm081v1?ijkey=bZd5KmPx1oIzV0I&keytype=ref
NAR is one of the principal sources for research in genomics and esp.
biocomputing.
In this work we report on a novel Lisp-driven cDNA (~gene) assembly
technique that combines both genomic (dna) and EST (rna) information
to vastly improve the reliability of gene identification (in cDNA
assembly). In this application, Lisp (specifically, ACL) served as
both the scripting language, and, more importantly, as the core
computing engine, running a rather intricate recursive clustering
algorithm. This algorithm is the central contribution of this work. It
is described in more detail in this paper:
Jain, M, Holz, H, Shrager, J, Vallon, O, Hauser, C, Grossman, AR.
18th International
Conference on Pattern Recognition (ICPR'06), IEEE
Available here:
http://nostoc.stanford.edu/jeff/personal/vita/pubs/2006JainICpR.pdf
From: Ken Tilton
Subject: Re: Lisp Driven Genomics in Nucleic Acids Research
Date:
Message-ID: <_04Kh.47$bd1.2@newsfe12.lga>
Damn! A top billing for Lisp (even tho "This algorithm is the central
contribution of this work.") calls for a top post!
:)
kt
········@gmail.com wrote:
> Our paper:
>
> M Jain, J Shrager, E Harris, R Holbrook, A Grossman, and O Vallon
> (2007)
> EST assembly supported by a draft genome sequence: an analysis of
> the
> Chlamydomonas reinhardtii transcriptome.
>
> has just appeared in the journal Nucleic Acids Research (NAR).
>
> The paper is freely available here:
>
> http://nar.oxfordjournals.org/cgi/content/full/gkm081v1?ijkey=bZd5KmPx1oIzV0I&keytype=ref
>
> NAR is one of the principal sources for research in genomics and esp.
> biocomputing.
>
> In this work we report on a novel Lisp-driven cDNA (~gene) assembly
> technique that combines both genomic (dna) and EST (rna) information
> to vastly improve the reliability of gene identification (in cDNA
> assembly). In this application, Lisp (specifically, ACL) served as
> both the scripting language, and, more importantly, as the core
> computing engine, running a rather intricate recursive clustering
> algorithm. This algorithm is the central contribution of this work. It
> is described in more detail in this paper:
>
> Jain, M, Holz, H, Shrager, J, Vallon, O, Hauser, C, Grossman, AR.
> 18th International
> Conference on Pattern Recognition (ICPR'06), IEEE
>
> Available here:
>
> http://nostoc.stanford.edu/jeff/personal/vita/pubs/2006JainICpR.pdf
>
--
"As long as algebra is taught in school,
there will be prayer in school." - Cokie Roberts
"Stand firm in your refusal to remain conscious during algebra."
- Fran Lebowitz
"I'm an algebra liar. I figure two good lies make a positive."
- Tim Allen
"Algebra is the metaphysics of arithmetic." - John Ray
http://www.theoryyalgebra.com/
On Mar 14, 9:35 pm, Ken Tilton <····@theoryyalgebra.com> wrote:
> Damn! A top billing for Lisp (even tho "This algorithm is the central
> contribution of this work.") calls for a top post!
>
> :)
I can never tell when you're kidding...even when you add smilies!
... and you *still* don't look anything like your picture!